A Python library for reading, writing, and analyzing geospatial vector data; use it when you need spatial operations (buffer/overlay/join), CRS reprojection, or map visualization on formats like Shapefile/GeoJSON/GeoPackage or PostGIS.

A Python library for working with DICOM (Digital Imaging and Communications in Medicine) files. Use this skill when you need to read, write, or modify DICOM format medical imaging data, extract pixel data from medical images (CT, MRI, X-ray, ultrasound), anonymize DICOM files, process DICOM metadata and tags, convert DICOM images to other formats, handle compressed DICOM data, or work with medical imaging datasets. Suitable for tasks involving medical image analysis, PACS systems, radiology workflows, and healthcare imaging applications.

Standard single-cell RNA-seq analysis pipeline. For quality control (QC), normalization, dimensionality reduction (PCA/UMAP/t-SNE), clustering, differential expression analysis, and visualization. Best suited for exploratory single-cell transcriptomics analysis using established workflows. For deep learning models, use scvi-tools; for data format issues, use anndata.

A Python bioinformatics toolkit for sequence, phylogeny, and microbiome/community-ecology analysis; use it when you need to compute diversity/ordination/statistics from biological data and standard formats (FASTA/FASTQ/Newick/BIOM).

Access over 200M protein structures from AlphaFold DB; use when you need to retrieve predicted 3D structures (PDB/mmCIF), confidence metrics (pLDDT/PAE), or protein metadata by UniProt accession.

Query the ChEMBL database for bioactive molecules, targets, bioactivities, and approved drugs; use this when you need to filter by physicochemical properties (e.g., MW, LogP), chemical structure (SMILES), or retrieve drug mechanism information.

Access CrossRef metadata for scholarly works; use when you need to resolve a DOI or search CrossRef to retrieve bibliographic details, citation/reference counts, or funder information for research and citation management.

Access the HGNC (HUGO Gene Nomenclature Committee) database to search for and retrieve gene information including symbols, names, IDs, and other metadata.

Extract experimental models, experimental methods, and biomarker information from paper Markdown (typically produced by PDF-to-Markdown tools) when a user provides paper Markdown and needs a structured, evidence-backed summary (1 Markdown + 3 CSVs).

Extract experimental materials and instrument information from PDFs (or PDF-derived text/Markdown) into three CSV tables; use when a paper/report contains sections like Materials and Methods, Key Resources Table, Reagents, Antibodies, Consumables, Software, Equipment, Instruments, or Reagent Preparation.

Expert system for generating comprehensive biomedical phenotype introductions with structured academic content. Use when users request detailed explanations of cellular phenotypes including concept, mechanism, regulation, and detection methods in Chinese academic writing.

Convert reference lists and in-text citations between RIS, BibTeX, plain text, and CSL-JSON, triggered when you need to unify bibliography/citation styles before journal submission or compare before/after formatting differences.

Batch-unify typography (font family, size, italics) for Word table cells and embedded charts; use when you need consistent formatting across theses/reports without changing body text.

Convert between IUPAC names, SMILES strings, molecular formulas, and common names for chemical compounds. Supports SMILES validation, batch processing, structure standardization, and cheminformatics database preparation for drug discovery workflows.

An academic proofreading skill for Chinese/English manuscripts, triggered when you need automated checks for spelling, grammar, terminology consistency, and formatting before submission.

Encrypt/decrypt local files, redact sensitive information in documents, and validate password strength when handling private data or preparing files for sharing.

Batch-convert and compress local images with Pillow; use when you need an offline, scriptable pipeline for directory-based processing.

Extracts key meeting information in chronological order and outputs decisions and action items; use when you need meeting minutes, action tracking, or project sync notes from transcripts or raw notes.

A local text formatting organizer for biomedical/academic writing; use it when you need to clean whitespace/line endings while preserving Markdown structures or when normalizing .docx/.md/.txt before submission or proofreading.

Access USPTO data (Patent Search, PEDS, TSDR, assignments) when you need to query patents/trademarks and retrieve prosecution or status information programmatically.

Prepares the codebase for a commit by formatting code and helping identify temporary comments.

Guide pour la rédaction de notifications de licenciement conformes au droit du travail français. Utiliser ce skill quand l'utilisateur demande de rédiger, préparer, créer ou éditer une lettre de notification de licenciement, notamment pour faute grave, faute lourde ou motif personnel. Le skill guide la collecte d'informations précises et la rédaction d'une notification juridiquement solide avec tous les éléments obligatoires du droit français.

Professional Excel spreadsheet creation with a focus on aesthetics and data analysis. Use when creating spreadsheets for organizing, analyzing, and presenting structured data in a clear and professional format.

Create publication-quality charts and graphs for economics papers.

Write and typeset economic models in LaTeX with proper notation

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'Translates LaTeX documents (.tex) to Typst (.typ), focusing on article-class documents. Use when asked to convert, port, migrate, or translate LaTeX to Typst. Covers document structure, text formatting, page layout, math equations and symbols, figures, tables, TikZ-to-CeTZ diagrams, bibliography, cross-references, footnotes, and code blocks. Includes comprehensive symbol mapping tables.'

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**Trigger:** `/replicate-paper [paper.pdf] [data.csv|dta]` or "replicate this paper"

Creates a Quarto revealjs slide deck in slides/ with the project style guide. Use when a presentation is needed.

Runs the clean render pipeline (HTML, PDF, Word) via scripts/render.sh. Use when asked to render, build, or compile the manuscript.

Periodically check WandB metrics during training to catch problems early (NaN, loss divergence, idle GPUs). Avoids wasting GPU hours on broken runs. Use when training is running and you want automated health checks.

Create journal-quality scientific figures with proper styling and accessibility

10 data wrangling skills. Trigger: messy data, format conversion, missing values, data reshaping. Design: pipeline-oriented recipes for common data cleaning and transformation tasks.

Data cleaning, transformation, and exploratory analysis with pandas

24 biomedical research skills. Trigger: medical research, clinical trials, genomics, bioinformatics. Design: domain databases, wet-lab/dry-lab methods, and ethical compliance guides.

OpenClaw bioinformatics skill library for genomics pipelines

Papers on AI agents for clinical dialogue and medical QA

AI research assistant for biomedicine, RNA-seq, and drug discovery

Run sequence similarity searches via the NCBI BLAST REST API

9 chemistry skills. Trigger: chemical structure analysis, reaction prediction, molecular modeling. Design: computational chemistry tools and cheminformatics workflows.

PNNL cheminformatics LLM agent for molecular analysis

Search PubChem for chemical compounds, structures, and bioassay data

Search computer science publications, authors, and venues via DBLP

Chinese and European political struggle history and comparative analysis

Computational drug-target interaction prediction and virtual screening

Particle physics data analysis with ROOT, HEPData, and event processing